Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103044321Si:ch211-204d2.4. (387 aa)    
Predicted Functional Partners:
mysm1
Myb-like, SWIRM and MPN domains 1.
    
 0.848
W5LUD6_ASTMX
Histone H2B; Belongs to the histone H2B family.
   
 0.675
W5LS50_ASTMX
Histone H2B; Belongs to the histone H2B family.
   
 0.675
W5LS98_ASTMX
Histone H2B; Belongs to the histone H2B family.
   
 0.675
ENSAMXP00000026752
annotation not available
   
 0.675
ENSAMXP00000039542
Histone H2B; Belongs to the histone H2B family.
   
 0.675
LOC103022800
Histone H2B; Belongs to the histone H2B family.
   
 0.675
rps27a
Ribosomal protein S27a.
   
  0.660
W5LFE7_ASTMX
Tumor protein p53 binding protein, 1.
    
 0.651
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.639
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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