Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103045290TLC domain containing 3A. (275 aa)    
Predicted Functional Partners:
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.640
ENSAMXP00000046158
Si:dkey-208b23.5.
    
 
 0.564
ppp1r16b
Protein phosphatase 1, regulatory subunit 16B.
    
 
 0.551
ppp4c
Serine/threonine-protein phosphatase.
    
 
 0.541
ENSAMXP00000053887
HIRA interacting protein 3.
      
 0.536
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 
 0.535
LOC103040212
Basic helix-loop-helix family, member a9.
      
 0.535
cln8
CLN8 transmembrane ER and ERGIC protein.
      
 0.519
cers5
Ceramide synthase 5.
   
  
 0.503
LOC103029426
Asp_Arg_Hydrox domain-containing protein.
      
 0.495
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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