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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm26RNA binding motif protein 26. (1037 aa)    
Predicted Functional Partners:
zfc3h1
TPR_REGION domain-containing protein.
   
 
 0.721
PABPN1L
Poly(A) binding protein nuclear 1 like, cytoplasmic.
    
 
 0.592
Pabpn1
Poly(A) binding protein, nuclear 1.
    
 
 0.592
mtrex
Mtr4 exosome RNA helicase.
   
 
 0.551
rbm17
RNA binding motif protein 17.
   
  
 0.527
LOC103024569
RRM domain-containing protein.
    
 
 0.497
Rnps1
RNA binding protein S1, serine-rich domain.
    
 
 0.497
skiv2l
SKI2 homolog, superkiller viralicidic activity 2-like.
   
 
 0.480
ythdf2
YTH N(6)-methyladenosine RNA binding protein 2.
   
 
 0.431
ythdf3
YTH N(6)-methyladenosine RNA binding protein 3.
   
 
 0.431
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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