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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FIBCD1Fibrinogen C domain containing 1. (416 aa)    
Predicted Functional Partners:
LOC103027002
Si:ch211-113j14.1; Belongs to the cytochrome P450 family.
      
 0.522
LOC103026864
Serine protease 16.
      
 0.515
COLEC10
Collectin subfamily member 10.
   
 0.477
colec11
Collectin sub-family member 11.
   
 0.477
LOC103041992
Pentraxin 3, long b.
    
 
 0.442
ptx3
Pentraxin 3, long a.
    
 
 0.442
kansl2
KAT8 regulatory NSL complex subunit 2.
    
 0.428
LOC103024031
Complement component 1, q subcomponent, C chain.
   
 
 0.412
LOC103046006
Arylsulfatase family, member Ib.
      
 0.408
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.