Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FIBCD1Fibrinogen C domain containing 1. (416 aa)    
Predicted Functional Partners:
lysmd3
LysM, putative peptidoglycan-binding, domain containing 3.
      
 0.712
LOC103027002
Si:ch211-113j14.1; Belongs to the cytochrome P450 family.
     
 0.675
LOC103046006
Arylsulfatase family, member Ib.
      
 0.663
LOC103026864
Serine protease 16.
   
  
 0.626
LOC103041992
Pentraxin 3, long b.
    
 
 0.625
ptx3
Pentraxin 3, long a.
    
 
 0.625
LOC103046211
V-ski avian sarcoma viral oncogene homolog a.
   
  
 0.571
kansl2
KAT8 regulatory NSL complex subunit 2.
    
 0.492
mcrs1
Microspherule protein 1.
    
  0.478
SDC1
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
  0.477
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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