Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
W5KYX5_ASTMXSubcommissural organ spondin. (4980 aa)    
Predicted Functional Partners:
Gp9
Glycoprotein IX (platelet).
   
 0.846
gp1bb
Glycoprotein Ib platelet subunit beta.
    
 0.841
LOC103043379
LRRCT domain-containing protein.
   
 0.815
W5K1A9_ASTMX
ADAM metallopeptidase with thrombospondin type 1 motif, 13.
    
 0.814
itgb5
Integrin beta; Belongs to the integrin beta chain family.
   
 0.783
ENSAMXP00000029585
Si:ch211-117l17.7.
    
 0.768
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.747
itga9
Integrin, alpha 9; Belongs to the integrin alpha chain family.
    
 0.745
Itga4
Integrin alpha 4; Belongs to the integrin alpha chain family.
    
 0.745
ITGA7
Integrin subunit alpha 7; Belongs to the integrin alpha chain family.
   
 0.741
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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