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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cunh9orf78Zgc:103692. (290 aa)    
Predicted Functional Partners:
slu7
SLU7 homolog, splicing factor.
   
 
 0.932
prpf8
Pre-mRNA processing factor 8.
    
 
 0.891
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
 
 0.874
Med22
Mediator complex subunit 22.
   
  
 0.855
prpf38a
Pre-mRNA processing factor 38A.
   
  
 0.798
NKAP
NFKB activating protein.
   
 
  0.796
pfdn6
Prefoldin subunit 6.
   
    0.740
med18
Mediator of RNA polymerase II transcription subunit 18; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
   
    0.740
Cwc22
CWC22 spliceosome associated protein homolog.
    
 0.732
syf2
SYF2 pre-mRNA-splicing factor.
   
 
 0.698
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.