rad54l protein (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rad54l

RAD54 like. (742 aa)

Predicted Functional Partners:

rad51

0.930

Rad54b

0.906

fancm

0.876

wrn

0.868

rad51d

0.835

mus81

0.785

W5KMS1_ASTMX

0.766

blm

0.749

rad52

0.742

exo1

0.726

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Rad54b	W5KMS1_ASTMX	ENSAMXP00000047224	ENSAMXP00000008883	RAD54 homolog B.	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	0.766
Rad54b	blm	ENSAMXP00000047224	ENSAMXP00000017467	RAD54 homolog B.	BLM RecQ like helicase.	0.749
Rad54b	exo1	ENSAMXP00000047224	ENSAMXP00000011213	RAD54 homolog B.	Exonuclease 1.	0.726
Rad54b	fancm	ENSAMXP00000047224	ENSAMXP00000020881	RAD54 homolog B.	Uncharacterized protein.	0.876
Rad54b	mus81	ENSAMXP00000047224	ENSAMXP00000043929	RAD54 homolog B.	MUS81 structure-specific endonuclease subunit.	0.785
Rad54b	rad51	ENSAMXP00000047224	ENSAMXP00000014064	RAD54 homolog B.	DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...]	0.930
Rad54b	rad51d	ENSAMXP00000047224	ENSAMXP00000050559	RAD54 homolog B.	DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents; Belongs to the RecA family. RAD51 subfamily.	0.835
Rad54b	rad52	ENSAMXP00000047224	ENSAMXP00000039051	RAD54 homolog B.	RAD52 homolog, DNA repair protein.	0.742
Rad54b	rad54l	ENSAMXP00000047224	ENSAMXP00000013166	RAD54 homolog B.	RAD54 like.	0.906
Rad54b	wrn	ENSAMXP00000047224	ENSAMXP00000010342	RAD54 homolog B.	WRN RecQ like helicase.	0.868
W5KMS1_ASTMX	Rad54b	ENSAMXP00000008883	ENSAMXP00000047224	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	RAD54 homolog B.	0.766
W5KMS1_ASTMX	blm	ENSAMXP00000008883	ENSAMXP00000017467	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	BLM RecQ like helicase.	0.790
W5KMS1_ASTMX	exo1	ENSAMXP00000008883	ENSAMXP00000011213	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	Exonuclease 1.	0.810
W5KMS1_ASTMX	fancm	ENSAMXP00000008883	ENSAMXP00000020881	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	Uncharacterized protein.	0.943
W5KMS1_ASTMX	mus81	ENSAMXP00000008883	ENSAMXP00000043929	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	MUS81 structure-specific endonuclease subunit.	0.819
W5KMS1_ASTMX	rad51	ENSAMXP00000008883	ENSAMXP00000014064	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...]	0.972
W5KMS1_ASTMX	rad51d	ENSAMXP00000008883	ENSAMXP00000050559	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents; Belongs to the RecA family. RAD51 subfamily.	0.901
W5KMS1_ASTMX	rad52	ENSAMXP00000008883	ENSAMXP00000039051	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	RAD52 homolog, DNA repair protein.	0.898
W5KMS1_ASTMX	rad54l	ENSAMXP00000008883	ENSAMXP00000013166	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	RAD54 like.	0.766
W5KMS1_ASTMX	wrn	ENSAMXP00000008883	ENSAMXP00000010342	Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.	WRN RecQ like helicase.	0.989