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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5L054_ASTMXNecdin-like 2. (262 aa)    
Predicted Functional Partners:
Smc5
AAA_23 domain-containing protein.
   
 0.999
Nsmce1
NSE1 homolog, SMC5-SMC6 complex component.
   
 0.999
nsmce4a
Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.
   
 0.998
nsmce2
NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.
    
 0.998
LOC103026721
Structural maintenance of chromosomes 6.
   
 0.975
ENSAMXP00000041723
Si:dkey-119f1.1.
   
 0.975
smc3
Structural maintenance of chromosomes protein.
    
 0.827
W5KF77_ASTMX
Uncharacterized protein.
    
 0.673
LOC103039499
Uncharacterized protein.
    
 0.673
npas4
Neuronal PAS domain protein 4a.
    
 0.673
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.