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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sephs1Selenophosphate synthetase 1. (392 aa)    
Predicted Functional Partners:
scly
Selenocysteine lyase.
    
 0.972
LOC103047502
Thioredoxin reductase 3.
  
 
 0.922
MOCOS
Molybdenum cofactor sulfurase; Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form.
    
 0.777
nfs1
NFS1 cysteine desulfurase.
    
 0.631
mrpl58
Mitochondrial ribosomal protein L58.
     
 0.607
eefsec
Eukaryotic elongation factor, selenocysteine-tRNA-specific.
     
 0.605
PSTK
Phosphoseryl-tRNA kinase.
      
 0.564
adsl
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
 0.564
trmu
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
      
 0.522
sars1
Seryl-tRNA synthetase.
      
 0.511
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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