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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5L0B4_ASTMXCarnitine palmitoyltransferase 1B (muscle). (664 aa)    
Predicted Functional Partners:
aasdh
Aminoadipate-semialdehyde dehydrogenase.
      
 0.565
usp25
Ubiquitin specific peptidase 25; Belongs to the peptidase C19 family.
      
 0.497
Psmb7
Proteasome subunit beta.
      
 0.495
usp19
Ubiquitin specific peptidase 19.
    
 
 0.484
usp28
Ubiquitin specific peptidase 28; Belongs to the peptidase C19 family.
      
 0.479
LOC103030509
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
      
 0.475
PPP1CB
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
      
 0.475
pnpla2
Patatin-like phospholipase domain containing 2.
      
 0.461
rnf25
Ring finger protein 25.
      
 0.431
SLC27A3
Solute carrier family 27 member 3.
      
 0.431
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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