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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103037644RNA binding motif protein 39b. (563 aa)    
Predicted Functional Partners:
W5LR04_ASTMX
RNA binding motif protein 25b.
   
 0.907
son
Uncharacterized protein.
   
  0.886
Cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.877
luc7l3
LUC7-like 3 pre-mRNA splicing factor.
   
 0.830
sf3b1
Splicing factor 3b, subunit 1.
   
 
 0.822
LOC103026862
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
0.793
LOC103024792
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
0.793
dda1
DET1 and DDB1 associated 1.
    
 
 0.791
ENSAMXP00000052495
Damage-specific DNA binding protein 1.
    
 
 0.746
LOC103031386
Uncharacterized protein.
   
 0.743
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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