STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
W5L0P0_ASTMXSpondin 1b. (779 aa)    
Predicted Functional Partners:
pofut2
Protein O-fucosyltransferase 2.
     
 0.712
W5KLB0_ASTMX
Beta 3-glucosyltransferase b.
     
 0.672
b3glct
Beta 3-glucosyltransferase a.
     
 0.672
gid8
GID complex subunit 8 homolog b (S. cerevisiae).
    
   0.521
W5L464_ASTMX
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
      
 0.514
GNG4
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
      
 0.483
LOC103030920
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
      
 0.483
VSTM2L
V-set and transmembrane domain containing 2 like.
      
 0.471
LOC103044339
V-set and transmembrane domain containing 2 like.
      
 0.471
rmnd5b
Required for meiotic nuclear division 5 homolog B.
    
   0.451
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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