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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5L0Y9_ASTMXTAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (388 aa)    
Predicted Functional Partners:
LOC103044966
TAR DNA binding protein.
   
 0.693
tardbp
TAR DNA binding protein, like.
   
 0.693
taf13
TATA-box binding protein associated factor 13.
   
 0.684
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
  0.683
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.679
LOC103043638
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.679
LOC103027270
Serine and arginine rich splicing factor 2a.
   
 0.668
ENSAMXP00000054367
Transcription initiation factor TFIID subunit.
     
 0.664
LOC103044580
Serine and arginine rich splicing factor 10b.
   
 0.652
W5L9Q8_ASTMX
Heterogeneous nuclear ribonucleoprotein M.
   
 0.652
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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