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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ribc2RIB43A domain with coiled-coils 2. (368 aa)    
Predicted Functional Partners:
tekt2
Tektin 2 (testicular).
   
 
 0.784
tekt3
Tektin 3.
   
 
 0.778
efhc1
EF-hand domain (C-terminal) containing 1.
   
 
 0.735
LOC103028563
Coiled-coil domain containing 114.
   
 
 0.734
W5KF91_ASTMX
Meiosis-specific nuclear structural 1.
    
 0.720
W5L1R1_ASTMX
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
    
 0.705
Cask
Calcium/calmodulin-dependent serine protein kinase a; Belongs to the MAGUK family.
    
 0.705
efhc2
EF-hand domain (C-terminal) containing 2.
   
 
 0.701
W5LNM7_ASTMX
Armadillo repeat containing 3.
   
 
 0.697
cfap45
Cilia and flagella associated protein 45.
   
 0.689
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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