Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
clstn1Calsyntenin 1. (971 aa)    
Predicted Functional Partners:
LOC103044410
Kinesin light chain 3.
    
 
 0.639
LOC103046668
Amyloid beta (A4) precursor protein b.
   
 
 0.587
APP
Amyloid beta precursor protein.
   
 
 0.587
App
BPTI/Kunitz inhibitor domain-containing protein.
   
 
 0.587
LOC103047573
Kinesin light chain 4.
    
 
 0.545
LOC111194328
TPR_REGION domain-containing protein.
    
 
 0.545
klc1
Kinesin light chain 1a.
    
 
 0.545
aplp2
Amyloid beta (A4) precursor-like protein 2.
   
 
 0.495
W5KCW8_ASTMX
Amyloid beta (A4) precursor protein-binding, family A, member 2b.
   
 
 0.452
Apba1
Amyloid beta (A4) precursor protein-binding, family A, member 1a.
   
 
 0.452
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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