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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abcb8ATP-binding cassette, sub-family B (MDR/TAP), member 8. (708 aa)    
Predicted Functional Partners:
Abcb7
ATP-binding cassette, sub-family B (MDR/TAP), member 7.
    
0.686
katnal2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
  
 0.548
tapbp
TAP binding protein (tapasin), tandem duplicate 1.
   
 0.533
ENSAMXP00000051967
ATPase family AAA domain containing 1a.
  
 0.531
LOC103038827
THAP-type domain-containing protein.
      
 0.528
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
   
  
 0.454
ccdc51
Coiled-coil domain containing 51.
    
 
 0.450
LOC103044311
Ubiquitin-conjugating enzyme E2 variant 1.
   
 
  0.438
LOC103045467
Thymine DNA glycosylase, tandem duplicate 2.
      
 0.405
LOC103043944
Thymine DNA glycosylase, tandem duplicate 1.
      
 0.405
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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