Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
W5L272_ASTMXADP-ribosylation factor-like 15b. (206 aa)    
Predicted Functional Partners:
trim23
Tripartite motif containing 23.
   
  0.667
W5KJM9_ASTMX
Uncharacterized protein.
    
 0.650
ENSAMXP00000031362
Uncharacterized protein.
    
 0.650
ENSAMXP00000037400
Uncharacterized protein.
    
 0.650
ENSAMXP00000041639
SH3 domain-containing protein.
    
 0.650
ENSAMXP00000045117
EH domain-containing protein.
    
 0.650
ENSAMXP00000052579
Uncharacterized protein.
    
 0.650
arfgap1
ADP-ribosylation factor GTPase activating protein 1.
    
 0.623
gxylt2
Glucoside xylosyltransferase 2.
      
 0.606
CNNM3
Cyclin and CBS domain divalent metal cation transport mediator 3.
   
 
 0.600
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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