Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
W5L2B2_ASTMXWD repeat domain 66. (936 aa)    
Predicted Functional Partners:
wdr78
WD repeat domain 78.
   
 
 0.919
WDR63
WD repeat domain 63.
   
 
 0.915
CFAP44
Cilia and flagella associated protein 44.
   
 0.912
Cfap43
Cilia and flagella associated protein 43.
   
 
 0.885
ENSAMXP00000040175
WD_REPEATS_REGION domain-containing protein.
   
 
 0.885
Ttc29
Uncharacterized protein.
   
 0.875
maats1
MYCBP-associated, testis expressed 1.
   
 
 0.874
cfap52
Cilia and flagella associated protein 52.
   
 0.864
cfap61
Cilia and flagella associated protein 61.
    
 0.850
Dnai1
Dynein, axonemal, intermediate chain 1, paralog 2.
 
 
 
 0.845
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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