STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103023568Homeobox A4. (246 aa)    
Predicted Functional Partners:
hoxc5
Homeobox C5a.
   
 
0.897
hoxc6
Homeobox C6a.
   
 
0.887
LOC103030519
Homeobox B6b.
   
 
0.800
LOC103045875
Homeobox B6a.
   
 
0.800
hoxd4
Homeobox D4a.
  
 
0.777
LOC111192049
Homeobox B5a.
   
 
0.736
LOC103029979
Homeobox B5b.
   
 
0.736
hoxb7
Homeobox B7a.
   
 
0.726
hoxc9
Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.
   
 
0.694
LOC103040777
Pre-B-cell leukemia homeobox 2.
    
 0.676
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.