KCNAB3 protein (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KCNAB3

Potassium voltage-gated channel subfamily A regulatory beta subunit 3. (432 aa)

Predicted Functional Partners:

LOC103046427

0.719

kcnf1

0.719

nup133

0.701

sec13

0.699

kcng1

0.692

nup107

0.691

kcnv1

0.676

nup85

0.654

seh1l

0.637

ENSAMXP00000036136

0.628

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000036136	KCNAB3	ENSAMXP00000036136	ENSAMXP00000036560	Si:dkey-43k4.5; Belongs to the potassium channel family.	Potassium voltage-gated channel subfamily A regulatory beta subunit 3.	0.628
KCNAB3	ENSAMXP00000036136	ENSAMXP00000036560	ENSAMXP00000036136	Potassium voltage-gated channel subfamily A regulatory beta subunit 3.	Si:dkey-43k4.5; Belongs to the potassium channel family.	0.628
KCNAB3	LOC103046427	ENSAMXP00000036560	ENSAMXP00000027712	Potassium voltage-gated channel subfamily A regulatory beta subunit 3.	Potassium voltage-gated channel, subfamily F, member 1a; Belongs to the potassium channel family.	0.719
KCNAB3	kcnf1	ENSAMXP00000036560	ENSAMXP00000044736	Potassium voltage-gated channel subfamily A regulatory beta subunit 3.	Potassium voltage-gated channel, subfamily F, member 1b; Belongs to the potassium channel family.	0.719
KCNAB3	kcng1	ENSAMXP00000036560	ENSAMXP00000042326	Potassium voltage-gated channel subfamily A regulatory beta subunit 3.	Potassium voltage-gated channel, subfamily G, member 1; Belongs to the potassium channel family.	0.692
KCNAB3	kcnv1	ENSAMXP00000036560	ENSAMXP00000044069	Potassium voltage-gated channel subfamily A regulatory beta subunit 3.	Potassium voltage-gated channel modifier subfamily V member 1; Belongs to the potassium channel family.	0.676
KCNAB3	nup107	ENSAMXP00000036560	ENSAMXP00000018661	Potassium voltage-gated channel subfamily A regulatory beta subunit 3.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.691
KCNAB3	nup133	ENSAMXP00000036560	ENSAMXP00000053170	Potassium voltage-gated channel subfamily A regulatory beta subunit 3.	Nucleoporin 133.	0.701
KCNAB3	nup85	ENSAMXP00000036560	ENSAMXP00000032625	Potassium voltage-gated channel subfamily A regulatory beta subunit 3.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.654
KCNAB3	sec13	ENSAMXP00000036560	ENSAMXP00000004465	Potassium voltage-gated channel subfamily A regulatory beta subunit 3.	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.	0.699
KCNAB3	seh1l	ENSAMXP00000036560	ENSAMXP00000051205	Potassium voltage-gated channel subfamily A regulatory beta subunit 3.	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.	0.637
LOC103046427	KCNAB3	ENSAMXP00000027712	ENSAMXP00000036560	Potassium voltage-gated channel, subfamily F, member 1a; Belongs to the potassium channel family.	Potassium voltage-gated channel subfamily A regulatory beta subunit 3.	0.719
kcnf1	KCNAB3	ENSAMXP00000044736	ENSAMXP00000036560	Potassium voltage-gated channel, subfamily F, member 1b; Belongs to the potassium channel family.	Potassium voltage-gated channel subfamily A regulatory beta subunit 3.	0.719
kcng1	KCNAB3	ENSAMXP00000042326	ENSAMXP00000036560	Potassium voltage-gated channel, subfamily G, member 1; Belongs to the potassium channel family.	Potassium voltage-gated channel subfamily A regulatory beta subunit 3.	0.692
kcnv1	KCNAB3	ENSAMXP00000044069	ENSAMXP00000036560	Potassium voltage-gated channel modifier subfamily V member 1; Belongs to the potassium channel family.	Potassium voltage-gated channel subfamily A regulatory beta subunit 3.	0.676
nup107	KCNAB3	ENSAMXP00000018661	ENSAMXP00000036560	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Potassium voltage-gated channel subfamily A regulatory beta subunit 3.	0.691
nup107	nup133	ENSAMXP00000018661	ENSAMXP00000053170	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin 133.	0.999
nup107	nup85	ENSAMXP00000018661	ENSAMXP00000032625	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
nup107	sec13	ENSAMXP00000018661	ENSAMXP00000004465	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.	0.999
nup107	seh1l	ENSAMXP00000018661	ENSAMXP00000051205	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.	0.999