STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103033155Si:ch211-113e8.11. (260 aa)    
Predicted Functional Partners:
W5K2N2_ASTMX
Si:dkey-21a6.5.
  
 
  0.489
ENSAMXP00000050266
Si:dkey-66i24.7.
  
     0.468
ENSAMXP00000038912
Uncharacterized protein.
   
  0.445
ENSAMXP00000054481
Si:ch211-79k12.1.
   
  0.445
W5LIP0_ASTMX
Si:ch211-37e10.2.
  
     0.438
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.401
W5K820_ASTMX
Translocase of outer mitochondrial membrane 20.
    
 0.401
W5JZH3_ASTMX
Si:dkey-117m1.4.
  
 
   0.400
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.