STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scube1Signal peptide, CUB domain, EGF-like 1. (1067 aa)    
Predicted Functional Partners:
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.580
W5K820_ASTMX
Translocase of outer mitochondrial membrane 20.
    
 0.580
W5KK24_ASTMX
Matrix metallopeptidase 9.
   
 0.514
ENSAMXP00000034241
Uncharacterized protein.
   
 0.514
ENSAMXP00000039153
Matrix metallopeptidase 9.
   
 0.514
irx3
Iroquois homeobox 3b.
   
 
 0.488
Ush1c
Usher syndrome 1C.
    
 
 0.463
ENSAMXP00000038912
Uncharacterized protein.
   
  0.445
ENSAMXP00000054481
Si:ch211-79k12.1.
   
  0.445
Ush2a
Uncharacterized protein.
    
 0.443
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.