STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103036203CCAAT/enhancer binding protein (C/EBP) 1. (206 aa)    
Predicted Functional Partners:
spi1
Spi-1 proto-oncogene b.
   
 0.668
E2f1
E2F transcription factor 1.
    
 0.665
cdk6
Cyclin-dependent kinase 6; Belongs to the protein kinase superfamily.
    
 0.646
cdk2
Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily.
    
 0.646
cdk1
Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.
    
 0.646
cdk4
Cyclin-dependent kinase 4; Belongs to the protein kinase superfamily.
    
 0.646
LOC103042980
Uncharacterized protein.
   
 0.636
LOC103046663
Cytochrome c oxidase subunit 5Aa.
   
 0.636
LOC111191755
Cytochrome c oxidase subunit 7C.
   
 0.631
W5KMV0_ASTMX
Uncharacterized protein.
   
 0.577
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.