LOC108263502 protein (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC108263502

Dual specificity protein kinase CLK2-like isoform X1; Belongs to the protein kinase superfamily. (285 aa)

Predicted Functional Partners:

rsrp1

0.675

LOC108267949

0.660

LOC108256391

0.618

srsf2

0.615

ythdc1

0.581

LOC108278759

0.568

LOC108278234

0.568

rbbp6

0.565

snip1

0.557

pnn

0.547

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108256391	LOC108263502	ENSIPUP00000034430	ENSIPUP00000000022	Serine/arginine-rich splicing factor 10-like.	Dual specificity protein kinase CLK2-like isoform X1; Belongs to the protein kinase superfamily.	0.618
LOC108256391	LOC108278234	ENSIPUP00000034430	ENSIPUP00000025203	Serine/arginine-rich splicing factor 10-like.	Serine/arginine-rich splicing factor 1A.	0.976
LOC108256391	LOC108278759	ENSIPUP00000034430	ENSIPUP00000012841	Serine/arginine-rich splicing factor 10-like.	Serine/arginine-rich splicing factor 1B.	0.976
LOC108256391	pnn	ENSIPUP00000034430	ENSIPUP00000019095	Serine/arginine-rich splicing factor 10-like.	Pinin.	0.783
LOC108256391	snip1	ENSIPUP00000034430	ENSIPUP00000025136	Serine/arginine-rich splicing factor 10-like.	Smad nuclear-interacting protein 1.	0.532
LOC108256391	srsf2	ENSIPUP00000034430	ENSIPUP00000005838	Serine/arginine-rich splicing factor 10-like.	Serine/arginine-rich Splicing factor 2.	0.823
LOC108256391	ythdc1	ENSIPUP00000034430	ENSIPUP00000026768	Serine/arginine-rich splicing factor 10-like.	YTH domain-containing protein 1 isoform X1.	0.717
LOC108263502	LOC108256391	ENSIPUP00000000022	ENSIPUP00000034430	Dual specificity protein kinase CLK2-like isoform X1; Belongs to the protein kinase superfamily.	Serine/arginine-rich splicing factor 10-like.	0.618
LOC108263502	LOC108267949	ENSIPUP00000000022	ENSIPUP00000009401	Dual specificity protein kinase CLK2-like isoform X1; Belongs to the protein kinase superfamily.	Apoptotic chromatin condensation inducer in the nucleus-like.	0.660
LOC108263502	LOC108278234	ENSIPUP00000000022	ENSIPUP00000025203	Dual specificity protein kinase CLK2-like isoform X1; Belongs to the protein kinase superfamily.	Serine/arginine-rich splicing factor 1A.	0.568
LOC108263502	LOC108278759	ENSIPUP00000000022	ENSIPUP00000012841	Dual specificity protein kinase CLK2-like isoform X1; Belongs to the protein kinase superfamily.	Serine/arginine-rich splicing factor 1B.	0.568
LOC108263502	pnn	ENSIPUP00000000022	ENSIPUP00000019095	Dual specificity protein kinase CLK2-like isoform X1; Belongs to the protein kinase superfamily.	Pinin.	0.547
LOC108263502	rbbp6	ENSIPUP00000000022	ENSIPUP00000002237	Dual specificity protein kinase CLK2-like isoform X1; Belongs to the protein kinase superfamily.	E3 ubiquitin-protein ligase RBBP6 isoform X1.	0.565
LOC108263502	rsrp1	ENSIPUP00000000022	ENSIPUP00000029473	Dual specificity protein kinase CLK2-like isoform X1; Belongs to the protein kinase superfamily.	Arginine/serine-rich protein 1.	0.675
LOC108263502	snip1	ENSIPUP00000000022	ENSIPUP00000025136	Dual specificity protein kinase CLK2-like isoform X1; Belongs to the protein kinase superfamily.	Smad nuclear-interacting protein 1.	0.557
LOC108263502	srsf2	ENSIPUP00000000022	ENSIPUP00000005838	Dual specificity protein kinase CLK2-like isoform X1; Belongs to the protein kinase superfamily.	Serine/arginine-rich Splicing factor 2.	0.615
LOC108263502	ythdc1	ENSIPUP00000000022	ENSIPUP00000026768	Dual specificity protein kinase CLK2-like isoform X1; Belongs to the protein kinase superfamily.	YTH domain-containing protein 1 isoform X1.	0.581
LOC108267949	LOC108263502	ENSIPUP00000009401	ENSIPUP00000000022	Apoptotic chromatin condensation inducer in the nucleus-like.	Dual specificity protein kinase CLK2-like isoform X1; Belongs to the protein kinase superfamily.	0.660
LOC108267949	pnn	ENSIPUP00000009401	ENSIPUP00000019095	Apoptotic chromatin condensation inducer in the nucleus-like.	Pinin.	0.994
LOC108267949	snip1	ENSIPUP00000009401	ENSIPUP00000025136	Apoptotic chromatin condensation inducer in the nucleus-like.	Smad nuclear-interacting protein 1.	0.860