ENSIPUP00000000036 protein (Ictalurus punctatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSIPUP00000000036

annotation not available (458 aa)

Predicted Functional Partners:

ENSIPUP00000000034

0.932

LOC108262761

0.832

rbbp7

0.801

rbbp4

0.801

kdm1a

0.792

mta2

0.770

LOC108273982

0.750

mta1

0.750

LOC108255101

0.720

sall4

0.688

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000000034	ENSIPUP00000000036	ENSIPUP00000000034	ENSIPUP00000000036	Chromodomain-helicase-DNA-binding protein 4-like.	annotation not available	0.932
ENSIPUP00000000034	LOC108255101	ENSIPUP00000000034	ENSIPUP00000004158	Chromodomain-helicase-DNA-binding protein 4-like.	NGFI-A-binding protein 2-like isoform X1.	0.720
ENSIPUP00000000034	LOC108262761	ENSIPUP00000000034	ENSIPUP00000000037	Chromodomain-helicase-DNA-binding protein 4-like.	chromodomain-helicase-DNA-binding protein 4-like.	0.503
ENSIPUP00000000034	LOC108273982	ENSIPUP00000000034	ENSIPUP00000011933	Chromodomain-helicase-DNA-binding protein 4-like.	Metastasis-associated protein MTA3-like isoform X2.	0.750
ENSIPUP00000000034	kdm1a	ENSIPUP00000000034	ENSIPUP00000006134	Chromodomain-helicase-DNA-binding protein 4-like.	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family.	0.792
ENSIPUP00000000034	mta1	ENSIPUP00000000034	ENSIPUP00000035293	Chromodomain-helicase-DNA-binding protein 4-like.	Metastasis-associated protein MTA1 isoform X1.	0.750
ENSIPUP00000000034	mta2	ENSIPUP00000000034	ENSIPUP00000026704	Chromodomain-helicase-DNA-binding protein 4-like.	Metastasis-associated protein MTA2.	0.770
ENSIPUP00000000034	rbbp4	ENSIPUP00000000034	ENSIPUP00000032301	Chromodomain-helicase-DNA-binding protein 4-like.	Histone-binding protein RBBP4.	0.801
ENSIPUP00000000034	rbbp7	ENSIPUP00000000034	ENSIPUP00000018695	Chromodomain-helicase-DNA-binding protein 4-like.	Histone-binding protein RBBP7 isoform X1.	0.801
ENSIPUP00000000034	sall4	ENSIPUP00000000034	ENSIPUP00000028301	Chromodomain-helicase-DNA-binding protein 4-like.	Sal-like protein 4.	0.688
ENSIPUP00000000036	ENSIPUP00000000034	ENSIPUP00000000036	ENSIPUP00000000034	annotation not available	Chromodomain-helicase-DNA-binding protein 4-like.	0.932
ENSIPUP00000000036	LOC108255101	ENSIPUP00000000036	ENSIPUP00000004158	annotation not available	NGFI-A-binding protein 2-like isoform X1.	0.720
ENSIPUP00000000036	LOC108262761	ENSIPUP00000000036	ENSIPUP00000000037	annotation not available	chromodomain-helicase-DNA-binding protein 4-like.	0.832
ENSIPUP00000000036	LOC108273982	ENSIPUP00000000036	ENSIPUP00000011933	annotation not available	Metastasis-associated protein MTA3-like isoform X2.	0.750
ENSIPUP00000000036	kdm1a	ENSIPUP00000000036	ENSIPUP00000006134	annotation not available	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family.	0.792
ENSIPUP00000000036	mta1	ENSIPUP00000000036	ENSIPUP00000035293	annotation not available	Metastasis-associated protein MTA1 isoform X1.	0.750
ENSIPUP00000000036	mta2	ENSIPUP00000000036	ENSIPUP00000026704	annotation not available	Metastasis-associated protein MTA2.	0.770
ENSIPUP00000000036	rbbp4	ENSIPUP00000000036	ENSIPUP00000032301	annotation not available	Histone-binding protein RBBP4.	0.801
ENSIPUP00000000036	rbbp7	ENSIPUP00000000036	ENSIPUP00000018695	annotation not available	Histone-binding protein RBBP7 isoform X1.	0.801
ENSIPUP00000000036	sall4	ENSIPUP00000000036	ENSIPUP00000028301	annotation not available	Sal-like protein 4.	0.688