Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC108272316Tumor necrosis factor receptor superfamily member 11B-like isoform X1. (497 aa)    
Predicted Functional Partners:
tnfsf11
Tumor necrosis factor ligand superfamily member 10; Belongs to the tumor necrosis factor family.
    
 0.998
LOC108274553
Tumor necrosis factor receptor superfamily member 6B-like.
     
 
0.900
ENSIPUP00000018941
annotation not available
      
 0.690
LOC108256756
Tumor necrosis factor ligand superfamily member 14-like; Belongs to the tumor necrosis factor family.
    
 0.680
LOC108258817
Tumor necrosis factor ligand superfamily member 6-like; Belongs to the tumor necrosis factor family.
    
 0.680
cd40lg
CD40 ligand; Belongs to the tumor necrosis factor family.
    
 0.644
acp5
Tartrate-resistant acid phosphatase type 5.
   
  
 0.631
LOC108269014
Tartrate-resistant acid phosphatase type 5.
   
  
 0.631
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.575
LOC108277448
Tumor necrosis factor-like.
   
 0.539
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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