Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC108270481Tumor necrosis factor receptor superfamily member 5-like. (310 aa)    
Predicted Functional Partners:
LOC108256756
Tumor necrosis factor ligand superfamily member 14-like; Belongs to the tumor necrosis factor family.
    
 0.954
LOC108258817
Tumor necrosis factor ligand superfamily member 6-like; Belongs to the tumor necrosis factor family.
    
 0.954
LOC108271110
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.905
traf3
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.905
LOC108255825
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.862
LOC108264960
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.862
traf2
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.862
tnfsf11
Tumor necrosis factor ligand superfamily member 10; Belongs to the tumor necrosis factor family.
    
 0.804
cd40lg
CD40 ligand; Belongs to the tumor necrosis factor family.
    
 0.786
tnfsf13b
Tumor necrosis factor ligand superfamily member 13B isoform X1; Belongs to the tumor necrosis factor family.
    
 0.774
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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