Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cdkal1Threonylcarbamoyladenosine tRNA methylthiotransferase. (564 aa)    
Predicted Functional Partners:
mms19
MMS19 nucleotide excision repair protein homolog.
   
 
 0.967
ciao1
Probable cytosolic iron-sulfur protein assembly protein CIAO1; Key component of the cytosolic iron-sulfur protein assembly (CIA) complex, a multiprotein complex that mediates the incorporation of iron-sulfur cluster into extramitochondrial Fe/S proteins. Belongs to the WD repeat CIA1 family.
    
 
 0.932
aifm2
Apoptosis-inducing factor 2 isoform X1.
      
 0.917
tmlhe
Trimethyllysine dioxygenase, mitochondrial isoform X1.
      
 0.904
ciao2b
Mitotic spindle-associated MMXD complex subunit MIP18.
    
 
 0.790
hhex
Hematopoietically-expressed homeobox protein HHEX.
      
 0.760
fto
Alpha-ketoglutarate-dependent dioxygenase FTO isoform X1.
      
 0.707
ssr1
Translocon-associated protein subunit alpha isoform X1.
      
 0.681
cdc123
Cell division cycle protein 123 homolog; Required for S phase entry of the cell cycle. Belongs to the CDC123 family.
    
 
 0.673
trmt12
tRNA wybutosine-synthesizing protein 2 homolog isoform X1.
   
  
 0.646
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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