Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sox4Transcription factor SOX. (359 aa)    
Predicted Functional Partners:
tcf7
Transcription factor 7 isoform X6.
    
 0.627
ENSIPUP00000036008
annotation not available
   
 0.594
lef1
Lymphoid enhancer-binding factor 1 isoform X1.
    
 0.578
LOC108265410
Transcription factor 7-like 1-B.
    
 0.561
tcf7l2
Transcription factor 7-like 2 isoform X2.
    
 0.561
sox13
Transcription factor SOX-13 isoform X1.
   
0.558
galnt1
Polypeptide N-acetylgalactosaminyltransferase.
      
 0.547
LOC108279325
POU domain protein.
    
 0.521
ctnnb1
Catenin beta-1 isoform X3.
    
 0.488
LOC108280080
Neural Wiskott-Aldrich syndrome protein-like.
      
 0.481
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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