Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC108265649Regulation of nuclear pre-mRNA domain-containing protein 2-like isoform X2. (972 aa)    
Predicted Functional Partners:
polr2g
DNA-directed RNA polymerase II subunit RPB7.
    
  0.905
rpap2
Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2.
   
 0.863
supt5h
Transcription elongation factor SPT5.
   
 0.849
rprd1b
Regulation of nuclear pre-mRNA domain-containing protein 1B isoform X3.
    
 0.836
ENSIPUP00000022130
Regulation of nuclear pre-mRNA domain containing 1A.
    
 0.836
polr2b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.819
polr2j
DNA-directed RNA polymerase II subunit RPB11-a.
    
  0.777
polr2c
DNA-directed RNA polymerase II subunit RPB3 isoform X1.
    
 0.766
polr2m
Protein GRINL1A.
    
 
 0.766
pcf11
pre-mRNA cleavage complex 2 protein Pcf11.
   
 0.748
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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