STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108273768Guanine nucleotide-binding protein subunit alpha-13-like. (376 aa)    
Predicted Functional Partners:
arhgef11
Rho guanine nucleotide exchange factor 11 isoform X3.
    
 0.978
LOC108277910
Rho guanine nucleotide exchange factor 12-like isoform X1.
    
 0.978
arhgef1
Rho guanine nucleotide exchange factor 1 isoform X4.
    
 0.978
LOC108260059
Rho guanine nucleotide exchange factor 12-like isoform X2.
    
 0.978
LOC108276624
alpha-1A adrenergic receptor-like.
    
 0.961
LOC108264882
alpha-1A adrenergic receptor-like.
    
 0.961
adra1d
alpha-1D adrenergic receptor isoform X1.
   
 0.946
LOC108269087
alpha-1A adrenergic receptor-like.
    
 0.945
adra1b
alpha-1B adrenergic receptor.
    
 0.945
lpar1
Lysophosphatidic acid receptor 1; Belongs to the G-protein coupled receptor 1 family.
    
 0.935
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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