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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108272095Ubiquitin-like modifier-activating enzyme 1; Belongs to the ubiquitin-activating E1 family. (1015 aa)    
Predicted Functional Partners:
trip12
E3 ubiquitin-protein ligase TRIP12.
   
 0.976
LOC108255212
Ubiquitin-conjugating enzyme E2 variant 1.
   
 
 0.965
ub2v1
Ubiquitin-conjugating enzyme E2 variant 1.
   
 
 0.965
ube2n
Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.
  
 0.936
rps27a
Ubiquitin-40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be invo [...]
   
 0.932
uba52
ubiquitin-60S ribosomal protein L40 isoform X1.
   
 0.916
uba6
Ubiquitin-like modifier-activating enzyme 6 isoform X2.
  
  
 
0.909
uba1
Ubiquitin-like modifier-activating enzyme 1; Belongs to the ubiquitin-activating E1 family.
  
  
 
0.908
ube2g2
Ubiquitin-conjugating enzyme E2 G2; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.901
ube2r2
Ubiquitin-conjugating enzyme E2 R2; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.883
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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