LOC108273767 protein (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC108273767

Regulator of G-protein signaling 9-like isoform X2. (482 aa)

Predicted Functional Partners:

LOC108271583

0.977

LOC108265815

0.972

LOC108272010

0.967

LOC108265728

0.967

LOC108257427

0.931

pde6g

0.873

gnb5

0.825

ENSIPUP00000024490

0.825

LOC108268154

0.749

cct5

0.741

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000024490	LOC108257427	ENSIPUP00000024490	ENSIPUP00000033926	Guanine nucleotide binding protein (G protein), beta 5b.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.815
ENSIPUP00000024490	LOC108265728	ENSIPUP00000024490	ENSIPUP00000036266	Guanine nucleotide binding protein (G protein), beta 5b.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	0.426
ENSIPUP00000024490	LOC108265815	ENSIPUP00000024490	ENSIPUP00000005830	Guanine nucleotide binding protein (G protein), beta 5b.	Guanine nucleotide-binding protein G(T) subunit alpha-2-like.	0.694
ENSIPUP00000024490	LOC108268154	ENSIPUP00000024490	ENSIPUP00000007676	Guanine nucleotide binding protein (G protein), beta 5b.	Regulator of G-protein signaling 9-binding protein B-like.	0.819
ENSIPUP00000024490	LOC108271583	ENSIPUP00000024490	ENSIPUP00000001239	Guanine nucleotide binding protein (G protein), beta 5b.	Guanine nucleotide-binding protein G(T) subunit alpha-1.	0.694
ENSIPUP00000024490	LOC108272010	ENSIPUP00000024490	ENSIPUP00000000869	Guanine nucleotide binding protein (G protein), beta 5b.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like.	0.426
ENSIPUP00000024490	LOC108273767	ENSIPUP00000024490	ENSIPUP00000001014	Guanine nucleotide binding protein (G protein), beta 5b.	Regulator of G-protein signaling 9-like isoform X2.	0.825
ENSIPUP00000024490	cct5	ENSIPUP00000024490	ENSIPUP00000010561	Guanine nucleotide binding protein (G protein), beta 5b.	T-complex protein 1 subunit epsilon.	0.928
ENSIPUP00000024490	pde6g	ENSIPUP00000024490	ENSIPUP00000010452	Guanine nucleotide binding protein (G protein), beta 5b.	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma.	0.532
LOC108257427	ENSIPUP00000024490	ENSIPUP00000033926	ENSIPUP00000024490	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), beta 5b.	0.815
LOC108257427	LOC108265728	ENSIPUP00000033926	ENSIPUP00000036266	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	0.988
LOC108257427	LOC108265815	ENSIPUP00000033926	ENSIPUP00000005830	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide-binding protein G(T) subunit alpha-2-like.	0.977
LOC108257427	LOC108271583	ENSIPUP00000033926	ENSIPUP00000001239	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide-binding protein G(T) subunit alpha-1.	0.991
LOC108257427	LOC108272010	ENSIPUP00000033926	ENSIPUP00000000869	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like.	0.988
LOC108257427	LOC108273767	ENSIPUP00000033926	ENSIPUP00000001014	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Regulator of G-protein signaling 9-like isoform X2.	0.931
LOC108257427	gnb5	ENSIPUP00000033926	ENSIPUP00000013737	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine Nucleotide-binding protein subunit beta-5.	0.815
LOC108257427	pde6g	ENSIPUP00000033926	ENSIPUP00000010452	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma.	0.853
LOC108265728	ENSIPUP00000024490	ENSIPUP00000036266	ENSIPUP00000024490	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	Guanine nucleotide binding protein (G protein), beta 5b.	0.426
LOC108265728	LOC108257427	ENSIPUP00000036266	ENSIPUP00000033926	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.988
LOC108265728	LOC108265815	ENSIPUP00000036266	ENSIPUP00000005830	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	Guanine nucleotide-binding protein G(T) subunit alpha-2-like.	0.972