LOC108277878 protein (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC108277878

Sialoadhesin-like isoform X2. (310 aa)

Predicted Functional Partners:

LOC108277818

0.579

LOC108276970

0.579

cd79a

0.509

cd79b

0.492

LOC108263538

0.458

ptpn11

0.458

LOC108276278

0.458

LOC100305014

0.448

ENSIPUP00000007029

0.419

aplp1

0.406

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSIPUP00000007029	LOC108277878	ENSIPUP00000007029	ENSIPUP00000001029	Myelin basic protein b.	Sialoadhesin-like isoform X2.	0.419
LOC100305014	LOC108277878	ENSIPUP00000003494	ENSIPUP00000001029	DAP12 isoform X1.	Sialoadhesin-like isoform X2.	0.448
LOC108263538	LOC108277878	ENSIPUP00000000032	ENSIPUP00000001029	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Sialoadhesin-like isoform X2.	0.458
LOC108263538	cd79a	ENSIPUP00000000032	ENSIPUP00000028478	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	B-cell antigen receptor complex-associated protein alpha chain precursor.	0.470
LOC108263538	cd79b	ENSIPUP00000000032	ENSIPUP00000022466	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	B-cell antigen receptor complex-associated protein beta chain precursor.	0.505
LOC108276278	LOC108277878	ENSIPUP00000031802	ENSIPUP00000001029	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Sialoadhesin-like isoform X2.	0.458
LOC108276278	cd79a	ENSIPUP00000031802	ENSIPUP00000028478	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	B-cell antigen receptor complex-associated protein alpha chain precursor.	0.470
LOC108276278	cd79b	ENSIPUP00000031802	ENSIPUP00000022466	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	B-cell antigen receptor complex-associated protein beta chain precursor.	0.505
LOC108276278	ptpn11	ENSIPUP00000031802	ENSIPUP00000021966	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.901
LOC108276970	LOC108277878	ENSIPUP00000031645	ENSIPUP00000001029	Oligodendrocyte-myelin glycoprotein-like.	Sialoadhesin-like isoform X2.	0.579
LOC108277818	LOC108277878	ENSIPUP00000005241	ENSIPUP00000001029	Oligodendrocyte-myelin glycoprotein-like.	Sialoadhesin-like isoform X2.	0.579
LOC108277878	ENSIPUP00000007029	ENSIPUP00000001029	ENSIPUP00000007029	Sialoadhesin-like isoform X2.	Myelin basic protein b.	0.419
LOC108277878	LOC100305014	ENSIPUP00000001029	ENSIPUP00000003494	Sialoadhesin-like isoform X2.	DAP12 isoform X1.	0.448
LOC108277878	LOC108263538	ENSIPUP00000001029	ENSIPUP00000000032	Sialoadhesin-like isoform X2.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.458
LOC108277878	LOC108276278	ENSIPUP00000001029	ENSIPUP00000031802	Sialoadhesin-like isoform X2.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.458
LOC108277878	LOC108276970	ENSIPUP00000001029	ENSIPUP00000031645	Sialoadhesin-like isoform X2.	Oligodendrocyte-myelin glycoprotein-like.	0.579
LOC108277878	LOC108277818	ENSIPUP00000001029	ENSIPUP00000005241	Sialoadhesin-like isoform X2.	Oligodendrocyte-myelin glycoprotein-like.	0.579
LOC108277878	aplp1	ENSIPUP00000001029	ENSIPUP00000027616	Sialoadhesin-like isoform X2.	Amyloid-like protein 1 isoform X2.	0.406
LOC108277878	cd79a	ENSIPUP00000001029	ENSIPUP00000028478	Sialoadhesin-like isoform X2.	B-cell antigen receptor complex-associated protein alpha chain precursor.	0.509
LOC108277878	cd79b	ENSIPUP00000001029	ENSIPUP00000022466	Sialoadhesin-like isoform X2.	B-cell antigen receptor complex-associated protein beta chain precursor.	0.492