STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108272494GTPase IMAP family member 8-like. (423 aa)    
Predicted Functional Partners:
UNC79
Protein unc-79 homolog isoform X3.
    
 0.703
ENSIPUP00000019732
annotation not available
    
 0.513
ENSIPUP00000019829
annotation not available
    
 0.513
LOC108261082
RANBP2-like and GRIP domain-containing protein 5/6.
    
 0.513
eef1g
Elongation factor 1-gamma.
    
 0.458
polr2f
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
 0.453
ash2l
set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X1.
    
 0.438
rbbp5
Retinoblastoma-binding protein 5 isoform X1.
    
 0.436
Tep1
Telomerase associated protein 1.
    
 0.431
tep1
Telomerase protein component 1 isoform X1.
    
 0.431
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.