Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108273766MKL/myocardin-like protein 1. (1132 aa)    
Predicted Functional Partners:
srf
Serum response factor isoform X3.
    
 0.849
LOC108270922
Serum response factor-like isoform X1.
    
 0.849
mtpap
Poly(A) RNA polymerase, mitochondrial.
      
 0.585
mib2
E3 ubiquitin-protein ligase MIB2 isoform X1.
   
 0.572
LOC108275705
Profilin; Belongs to the profilin family.
    
 0.555
pfn2
Profilin; Belongs to the profilin family.
    
 0.555
pnpo
Pyridoxine-5'-phosphate oxidase.
      
 0.552
map2k7
Dual specificity mitogen-activated protein kinase kinase 7 isoform X1.
    
  0.547
LOC108258691
Actin, cytoplasmic 1.
    
 0.522
actrt3
Actin-related protein T3.
    
 0.522
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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