Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pyroxd2Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 isoform X2. (576 aa)    
Predicted Functional Partners:
fdft1
Squalene synthase isoform X2.
  
 
 0.707
appbp2
Amyloid protein-binding protein 2.
    
   0.698
tyw3
tRNA wybutosine-synthesizing protein 3 homolog.
      
 0.671
lzic
Protein LZIC.
      
 0.656
LOC108272246
Acyl-coenzyme A thioesterase THEM4-like isoform X4.
      
 0.650
iars2
isoleucine--tRNA ligase, mitochondrial isoform X2.
   
  
 0.648
ttc36
Tetratricopeptide repeat protein 36.
   
  
 0.644
tpd52l2
Tumor protein D54 isoform X1.
      
 0.628
LOC108276205
Tumor protein D54-like isoform X7.
      
 0.628
LOC108260138
U3 small nucleolar RNA-associated protein 14 homolog A-like.
      
 0.628
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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