Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bsgBasigin isoform X2. (393 aa)    
Predicted Functional Partners:
LOC108273316
XK-related protein.
    
 0.984
ppil2
Peptidyl-prolyl cis-trans isomerase-like 2.
    
 0.952
cav3
Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.
     
 0.907
xkr4
XK-related protein.
    
  0.901
LOC108269486
XK-related protein.
    
  0.901
xkr9
XK-related protein.
    
  0.901
xkr7
XK-related protein.
    
  0.901
LOC108258067
XK-related protein.
    
  0.901
LOC108272940
XK-related protein.
    
  0.901
LOC108272941
XK-related protein.
    
  0.901
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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