Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
slc25a28Mitoferrin-2; Belongs to the mitochondrial carrier (TC 2.A.29) family. (387 aa)    
Predicted Functional Partners:
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
   
  
 0.762
abcb10
ATP-binding cassette sub-family B member 10, mitochondrial isoform X1.
    
 
 0.759
LOC108265371
Frataxin, mitochondrial-like.
    
 
 0.696
ENSIPUP00000012814
Frataxin.
    
 
 0.696
ENSIPUP00000012899
annotation not available
    
 
 0.696
nars2
Probable asparagine--tRNA ligase, mitochondrial.
 
 
    0.665
abcb7
ATP-binding cassette sub-family B member 7, mitochondrial isoform X1.
    
 
 0.591
aco1
Cytoplasmic Aconitate hydratase; Belongs to the aconitase/IPM isomerase family.
    
 
 0.584
mrs2
Magnesium transporter.
   
 
 0.573
LOC108265738
5-aminolevulinate synthase.
   
  
 0.522
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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