Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
c5h1orf194Uncharacterized protein C1orf194 homolog. (160 aa)    
Predicted Functional Partners:
cfap52
Cilia- and flagella-associated protein 52.
   
 
 0.954
nme7
Nucleoside diphosphate kinase 7; Belongs to the NDK family.
    
 
 0.948
pacrg
Parkin coregulated gene protein.
   
 
 0.939
ribc1
RIB43A-like with coiled-coils protein 1 isoform X1.
   
 
 0.936
enkur
Enkurin isoform X1.
   
   0.891
ccdc173
Coiled-coil domain-containing protein 173.
   
 
 0.887
spag8
Sperm-associated antigen 8.
   
   0.886
LOC108259128
Meiosis-specific nuclear structural protein 1-like isoform X1.
   
 
 0.886
zmynd12
Zinc finger MYND domain-containing protein 12.
   
 
 0.882
c22h9orf135
Uncharacterized protein C9orf135 homolog.
   
   0.881
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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