LOC108277879 protein (Ictalurus punctatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC108277879

Sialoadhesin-like isoform X1. (521 aa)

Predicted Functional Partners:

LOC108256465

0.900

LOC108277883

0.900

LOC108277818

0.604

LOC108276970

0.604

aspa

0.599

lingo1

0.517

LOC108259198

0.517

cd79a

0.509

cd79b

0.492

LOC108257382

0.470

Your Current Organism:

Ictalurus punctatus

NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108256465	LOC108276970	ENSIPUP00000034725	ENSIPUP00000031645	Myelin-associated glycoprotein-like isoform X1.	Oligodendrocyte-myelin glycoprotein-like.	0.436
LOC108256465	LOC108277818	ENSIPUP00000034725	ENSIPUP00000005241	Myelin-associated glycoprotein-like isoform X1.	Oligodendrocyte-myelin glycoprotein-like.	0.436
LOC108256465	LOC108277879	ENSIPUP00000034725	ENSIPUP00000001073	Myelin-associated glycoprotein-like isoform X1.	Sialoadhesin-like isoform X1.	0.900
LOC108256465	LOC108277883	ENSIPUP00000034725	ENSIPUP00000036077	Myelin-associated glycoprotein-like isoform X1.	Myelin-associated glycoprotein-like isoform X1.	0.900
LOC108256465	aspa	ENSIPUP00000034725	ENSIPUP00000035929	Myelin-associated glycoprotein-like isoform X1.	Aspartoacylase.	0.599
LOC108256465	cd79a	ENSIPUP00000034725	ENSIPUP00000028478	Myelin-associated glycoprotein-like isoform X1.	B-cell antigen receptor complex-associated protein alpha chain precursor.	0.419
LOC108257382	LOC108277879	ENSIPUP00000004330	ENSIPUP00000001073	Myelin basic protein-like.	Sialoadhesin-like isoform X1.	0.470
LOC108257382	LOC108277883	ENSIPUP00000004330	ENSIPUP00000036077	Myelin basic protein-like.	Myelin-associated glycoprotein-like isoform X1.	0.588
LOC108259198	LOC108276970	ENSIPUP00000031515	ENSIPUP00000031645	Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1-B.	Oligodendrocyte-myelin glycoprotein-like.	0.714
LOC108259198	LOC108277818	ENSIPUP00000031515	ENSIPUP00000005241	Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1-B.	Oligodendrocyte-myelin glycoprotein-like.	0.714
LOC108259198	LOC108277879	ENSIPUP00000031515	ENSIPUP00000001073	Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1-B.	Sialoadhesin-like isoform X1.	0.517
LOC108259198	LOC108277883	ENSIPUP00000031515	ENSIPUP00000036077	Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1-B.	Myelin-associated glycoprotein-like isoform X1.	0.693
LOC108276970	LOC108256465	ENSIPUP00000031645	ENSIPUP00000034725	Oligodendrocyte-myelin glycoprotein-like.	Myelin-associated glycoprotein-like isoform X1.	0.436
LOC108276970	LOC108259198	ENSIPUP00000031645	ENSIPUP00000031515	Oligodendrocyte-myelin glycoprotein-like.	Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1-B.	0.714
LOC108276970	LOC108277879	ENSIPUP00000031645	ENSIPUP00000001073	Oligodendrocyte-myelin glycoprotein-like.	Sialoadhesin-like isoform X1.	0.604
LOC108276970	LOC108277883	ENSIPUP00000031645	ENSIPUP00000036077	Oligodendrocyte-myelin glycoprotein-like.	Myelin-associated glycoprotein-like isoform X1.	0.659
LOC108276970	lingo1	ENSIPUP00000031645	ENSIPUP00000021189	Oligodendrocyte-myelin glycoprotein-like.	Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1.	0.714
LOC108277818	LOC108256465	ENSIPUP00000005241	ENSIPUP00000034725	Oligodendrocyte-myelin glycoprotein-like.	Myelin-associated glycoprotein-like isoform X1.	0.436
LOC108277818	LOC108259198	ENSIPUP00000005241	ENSIPUP00000031515	Oligodendrocyte-myelin glycoprotein-like.	Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1-B.	0.714
LOC108277818	LOC108277879	ENSIPUP00000005241	ENSIPUP00000001073	Oligodendrocyte-myelin glycoprotein-like.	Sialoadhesin-like isoform X1.	0.604