Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ttc29Tetratricopeptide repeat protein 29 isoform X1. (440 aa)    
Predicted Functional Partners:
WDR63
WD repeat-containing protein 63.
   
 
 0.965
cfap43
Cilia- and flagella-associated protein 43 isoform X1.
   
 
 0.951
maats1
Protein MAATS1.
   
 0.919
LOC108280993
Coiled-coil domain-containing protein 114-like isoform X2.
   
 0.917
cfap44
Cilia- and flagella-associated protein 44 isoform X2.
   
 
 0.911
cfap58
Cilia- and flagella-associated protein 58 isoform X1.
   
 
 0.909
rsph3
Radial spoke head protein 3 homolog.
   
 
 0.890
cfap52
Cilia- and flagella-associated protein 52.
   
 0.890
cfap61
Cilia- and flagella-associated protein 61 isoform X1.
   
 
 0.867
nme5
Nucleoside diphosphate kinase-like protein 5; Belongs to the NDK family.
   
 
 0.866
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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