Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cenpjCentromere protein J isoform X1. (1178 aa)    
Predicted Functional Partners:
cep135
Centrosomal protein of 135 kDa isoform X1.
   
 0.980
stil
SCL-interrupting locus protein.
   
 
 0.978
itsn2
LOW QUALITY PROTEIN: intersectin-2.
    
 0.936
ENSIPUP00000019729
annotation not available
    
 0.936
LOC108269989
Intersectin-2-like isoform X1.
    
 0.936
sass6
Spindle assembly abnormal protein 6 homolog isoform X1.
   
 
 0.933
plk4
Serine/threonine-protein kinase PLK4 isoform X1.
   
 0.931
LOC108272725
Pericentrin-like isoform X6.
   
 0.930
aspm
Abnormal spindle-like microcephaly-associated protein isoform X1.
   
  
 0.929
cep63
Centrosomal protein of 63 kDa isoform X1.
    
 
 0.911
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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