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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108277667TBC1 domain family member 15-like. (420 aa)    
Predicted Functional Partners:
armc5
Armadillo repeat-containing protein 5.
   
 0.625
rab9a
Ras-related protein Rab-9A.
   
 0.625
LOC108268905
Ras-related protein Rab-9B-like isoform X1.
   
 0.625
ENSIPUP00000002209
annotation not available
   
 0.573
gabarap
Gamma-aminobutyric acid receptor-associated protein.
   
 0.573
gabarapl2
Gamma-aminobutyric acid receptor-associated protein-like 2.
   
 0.573
LOC108260203
Gamma-aminobutyric acid receptor-associated protein.
   
 0.573
ENSIPUP00000002531
annotation not available
    
 0.543
rab7a
Ras-related protein Rab-7a.
    
 0.543
LOC108271868
Ras-related protein Rab-7a-like.
    
 0.543
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.