Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108272104semaphorin-3F-like isoform X1; Belongs to the semaphorin family. (801 aa)    
Predicted Functional Partners:
LOC108266767
Neuropilin; Belongs to the neuropilin family.
    
 
 0.834
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 0.708
nprl2
Nitrogen permease regulator 2-like protein.
      
 0.697
sema3c
semaphorin-3C; Belongs to the semaphorin family.
    
   0.566
LOC108272036
Macrophage-stimulating protein receptor-like.
   
 0.558
met
Hepatocyte growth factor receptor isoform X1.
   
 0.558
mst1r
Macrophage-stimulating protein receptor.
   
 0.558
rassf1
Ras association domain-containing protein 1 isoform X1.
      
 0.516
LOC108255249
Ras association domain-containing protein 1-like.
      
 0.516
ect2
Protein ECT2 isoform X7.
    
 
 0.485
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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