Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rwdd1RWD domain-containing protein 1. (243 aa)    
Predicted Functional Partners:
drg2
Developmentally-regulated GTP-binding protein 2.
   
 0.999
drg1
Developmentally-regulated GTP-binding protein 1.
   
 0.991
gcn1
eIF-2-alpha kinase activator GCN1 isoform X1.
    
 
 0.934
denr
Density-regulated protein; Belongs to the DENR family.
   
    0.863
esf1
ESF1 homolog.
   
   0.809
zc3h15
Zinc finger CCCH domain-containing protein 15.
   
 
 0.793
mindy3
Protein FAM188A isoform X1.
      
 0.665
hspa14
Heat shock 70 kDa protein 14; Belongs to the heat shock protein 70 family.
   
   0.651
rnf24
RING finger protein 24 isoform X1.
      
 0.642
poldip3
Polymerase delta-interacting protein 3 isoform X2.
   
  
 0.633
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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