Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC108267422Rho GTPase-activating protein 6-like isoform X1. (673 aa)    
Predicted Functional Partners:
rab12
Ras-related protein Rab-12 isoform X1.
     
 0.710
aspm
Abnormal spindle-like microcephaly-associated protein isoform X1.
   
 
 0.629
rhbdl1
Rhomboid-related protein 1; Belongs to the peptidase S54 family.
      
 0.628
mtor
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
    
 
 0.603
kif11
Kinesin-like protein KIF11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
  
 0.596
ttk
Dual specificity protein kinase TTK isoform X1.
   
    0.581
LOC108266936
Rho-related GTP-binding protein RhoE.
    
 0.568
LOC108266963
Rho-related GTP-binding protein RhoE-like.
    
 0.568
rhoc
Rho-related gtp-binding protein rhoc.
    
 0.568
LOC108275505
Rho-related GTP-binding protein Rho6.
    
 0.568
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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