Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSIPUP00000001128annotation not available (175 aa)    
Predicted Functional Partners:
gga3
LOW QUALITY PROTEIN: ADP-ribosylation factor-binding protein GGA3.
    
 0.975
cltc
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.823
kif23
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.799
arfgap1
ADP-ribosylation factor GTPase-activating protein 1 isoform X1.
    
 0.719
fbxo8
F-box only protein 8 isoform X1.
    
 
 0.704
LOC108276920
Arfaptin-2-like isoform X2.
    
 0.700
LOC108278381
Arfaptin-2-like isoform X4.
    
 0.700
LOC108260818
Arfaptin-1-like isoform X1.
    
 0.700
LOC108273324
Cytohesin-2-like.
    
 0.680
itsn2
LOW QUALITY PROTEIN: intersectin-2.
    
 0.679
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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