Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
tgfbiTransforming growth factor-beta-induced protein ig-h3. (706 aa)    
Predicted Functional Partners:
LOC108279748
Lumican-like.
   
  
 0.574
col6a1
Collagen alpha-1(VI) chain.
   
 
 0.565
ND4
NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
    
 0.559
ndufs2
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial; Belongs to the complex I 49 kDa subunit family.
    
 
 0.554
col6a2
Collagen alpha-2(VI) chain.
   
 
 0.516
ggcx
Vitamin K-dependent gamma-carboxylase.
   
  
 0.487
atoh8
Protein atonal homolog 8 isoform X1.
      
 0.471
timp3
Metalloproteinase inhibitor 3.
   
 
 0.467
rp9
Retinitis pigmentosa 9 protein.
      
 0.465
fbln5
Fibulin-5.
   
  
 0.457
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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