Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zw10Centromere/kinetochore protein zw10 homolog. (768 aa)    
Predicted Functional Partners:
nbas
Neuroblastoma-amplified sequence.
   
 0.999
rint1
RAD50-interacting protein 1.
  
 0.999
LOC108255973
LOW QUALITY PROTEIN: kinetochore-associated protein 1-like.
   
 0.999
zwilch
Protein zwilch homolog.
   
 0.999
stx18
Syntaxin-18.
    
 0.996
use1
Vesicle transport protein USE1.
    
 0.993
LOC108279062
Vesicle transport protein SEC20-like isoform X1.
   
 0.974
LOC108265393
Vesicle-trafficking protein SEC22b-B isoform X1; Belongs to the synaptobrevin family.
    
 0.972
scfd2
Sec1 family domain-containing protein 2; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.968
copa
Coatomer subunit alpha; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.
    
 0.963
Your Current Organism:
Ictalurus punctatus
NCBI taxonomy Id: 7998
Other names: I. punctatus, Silurus punctatus, channel catfish
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